phylowgs is the accompanying software for the paper PhyloWGS: Reconstructing subclonal composition and evolution from whole-genome sequencing of tumors.

AutoDock vina is an open source program for molecular docking.

Vaa3D is a convenient, fast and multi-functional 3D/4D/5D image visualization and analysis system.

seqkit is a Cross platform super fast toolkit for FASTA/Q file operation in Golang.

Hypothesis testing using phylogenies,an open-source software package for comparative sequence analysis using stochastic evolutionary models.

Samblaster is a fast and flexible program for marking duplicates in read-id grouped1 paired-end SAM files.

Kyoto Tycoon is a lightweight network server on top of the Kyoto Cabinet key-value database, built for high-performance and concurrency.

TensorRT OSS includes the sources for TensorRT plugins and parsers (Caffe and ONNX), as well as sample applications demonstrating usage and capabilities of the TensorRT platform.

Java utilities for Bioinformatics.

ELK code is an all electron full potential linearized enhanced plane wave code, which plays an important role in the field of density functional theory.

Svseq2 is a classic tool for detecting structural variation using SR method. SVseq2 uses Split Read method to detect variation using PE read.

g_mmpbsa is a collaborative platform to design and discover new drugs for neglected tropical diseases such as Malaria, Tuberculosis, Leshmaniasis etc.

Smcpp is a program for estimating population size history from whole genome sequence data.

Paired-end Sequencing Data Detection Tool

The full name of PSMC is pairwise sequentially Markovian covalent.